Healthy Chocolate Muffins

4.91 from 22 votes
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Make a double batch of these Healthy Chocolate Muffins and store some in the freezer for easy access to healthy muffins.

These chocolate muffins are naturally sweetened, made with white whole wheat flour, and are so moist and delicious!

Healthy chocolate chip muffins on a cooling rack.
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Best Chocolate Muffins

These healthy chocolate muffins are one of our favorite muffins on Fit Foodie Finds! They are made with whole ingredients, naturally sweetened with bananas, maple syrup, and coconut sugar.

We love whipping up a batch of muffins and sticking half of them in the freezer for later and keeping half out for snacking.

These healthy chocolate muffins are:

  • Naturally sweetened with maple syrup and banana.
  • Made with 100% whole grain flour.
  • Easy to freeze.
  • Kid-friendly!
Scooping healthy chocolate muffin batter into a muffin tin

How are these healthy chocolate muffins?

At Fit Foodie Finds, we like our muffins chock full of the good stuff! We’re talking whole grains, healthy fats, and natural sweeteners. Here’s how these are healthier than normal muffins:

  • 100% whole grain
  • Naturally sweetened
  • Made with coconut oil

Favorite Baking Tools

One thing that will make baking a bit easier for anyone is having the right tools to bake! Below are some of the tools that we use every time we make these chocolate banana muffins and any other healthy muffin recipe on Fit Foodie Finds!

  • Different size mixing bowls. We love these nesting bowls from Target because we can have a bowl for dry ingredients and wet ingredients. Our most favorite part of these bowls is that they are dishwasher safe!
  • Hearty Muffin Tins. Get a sturdy muffin tin that doesn’t pop in the oven! We like using a nonstick muffin tin!
  • Muffin tin liners. There is nothing worse than a dirty muffin tin that you can’t get clean! If you don’t have a nonstick muffin tin, get these reusable silicone muffin liners!
  • Cooling Rack. A cooling rack allows your muffins to cool completely without sticking to the muffin tin or your counter!
healthy chocolate muffins

How to Make Healthy Chocolate Muffins

Baking muffins is a very relaxing and therapeutic activity for me! I love baking days by myself or a baking day with friends. You just can’t beat it.

Sometimes baking can be a scary thing for people because of all of the science. We try to make baking accessible for everyone and I want to assure you that these healthy chocolate muffins are a great recipe to help you reboot your relationship with baking.

  1. Mix Dry Ingredients: first, combine all dry ingredeints in a medium bowl.
  2. Mix Wet Ingredients: mash your bananas in a large bowl and then add the rest of the wet ingredients and mix.
  3. Combine both: combine dry and wet ingredients and then add melted coconut oil. Mix again.
  4. Transfer: line your muffin tray with muffin liners and then fill each one up 3/4 of the way full.
  5. Bake: bake at 350ºF for 18-22 minutes.
  6. Cool: let muffins cool for at least 10 minutes before removing from the pan.
healthy chocolate muffins on a cooling rack

Storage

Let muffins cool completely and then store in a cool, dark place for up to 3 days. Or, store in the fridge for up to 3-5 days.

How to Freeze Muffins

  1. Let your muffins cool competely.
  2. Next, transfer muffins onto a baking sheet. Freeze for 1-2 hours. Then, transferr muffins into a gallon-size bag and remove as much air as possible. Seal tightly.
  3. Freeze for up to 3 months.
healthy chocolate muffins on a cooling rack
4.91 from 22 votes

Healthy Chocolate Muffins

Delicious and fluffy healthy chocolate muffins made with whole grains, maple syrup, and coconut oil.
Prep: 15 minutes
Cook: 22 minutes
Total: 37 minutes
Servings: 12
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Ingredients 

Dry Ingredients

Wet Ingredients

Instructions 

  • First, preheat oven to 350ºF and line a muffin tin with muffin liners. We suggest also spraying your muffin liners with cooking spray just in case.
  • Next, place dry ingredients into a medium bowl and mix.
  • Then, in a small bowl, mash 1 large banana. Measure it and add 1 cup to a large bowl.
  • Crack 2 eggs into the large bowl and whisk with mashed banana. Add maple syrup, almond milk, and vanilla extract and mix until combined.
  • Add dry ingredients into wet ingredients and then mix. Then, add in melted coconut oil and mix again.
  • Fill each muffin about 3/4 of the way full (these are going to be big muffins) and sprinkle on a few more chocolate chips. Then, place in the oven at 350ºF and bake for 18-22 minutes or until the center is fully cooked.
  • Let cool for 5 minutes and then remove from the muffin tin to continue cooling.

Tips & Notes

  • *If you don’t like bananas, feel free to use another fruit puree such as applesauce or pumpkin.

Watch It

[adthrive-in-post-video-player video-id=”6AWKfDJ0″ upload-date=”2019-04-14T09:00:00.000Z” name=”Healthy Chocolate Muffins” description=”Make this healthy chocolate muffins recipe and never make another muffin recipe again!”]

Nutrition

Calories: 203 kcal, Carbohydrates: 31 g, Protein: 4 g, Fat: 8 g, Fiber: 4 g, Sugar: 15 g

Nutrition information is automatically calculated, so should only be used as an approximation.

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About Linley Hanson

Linley has played an important role in the success of Fit Foodie Finds over the last 10 years. She is an incredible home cook and has an amazing palate. She is the brain behind our recipes and has spent thousands of hours developing, testing, and perfecting the delicious meals you see here at Fit Foodie Finds.

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Amanda
Amanda
March 5, 2024 5:11 pm

5 stars
Made it vegan and itโ€™s delicious. Substituted eggs with flax eggs and used oat milk, applesauce, cane sugar and all purpose flour instead.

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amaya
amaya
April 12, 2023 5:13 pm

5 stars
these muffins are so soft and yummy, I subbed the coconut oil for butter and incorporated 1/2 cup of plain protein powder in place of the 1 1/2 cup of flour and they turned out so delicious!!

Emily Richter
April 17, 2023 10:17 am
Reply to  amaya

Yay!

Holly
Holly
November 11, 2022 3:11 pm

5 stars
THE BEST. I just made these. I used PANELA raw sugar instead of coconut sugar. I used freshly purรฉed APPLE SAUCE in place of banana. I used grass fed BUTTER in place of coconut oil. I used raw COWS MILK in place of almond. OUT OF THIS WORLD good. This is going to be one of those recipes that gets made a thousand times. I even thought: leave out cocoa powder and use this for a base recipe. Definitely gonna experiment but this was the most moist decadent muffin ever. It was like chocolate cake. 10/10 recommend.

Jess
Jess
November 10, 2022 5:57 pm

5 stars
THese are the BEST. The only change I made was reducing the sugar and I had to use white and whole wheat flour because its what I had. This recipe is a keeper!!! I am a chocolate addict

Kim
Kim
October 17, 2022 7:54 am

5 stars
Made these in my air fryer. Just delicious. Made a few swaps. Half cup pumpkin and half cup banana, all purpose flower, veg oil and granulated sugar in place of whole wheat pastry flour, coconut sugar, and coconut oil. Amazing flavor and texture.

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Emily Richter
October 17, 2022 3:49 pm
Reply to  Kim

Fun! Thanks for sharing that these muffins worked for you in the air fryer!

Jessica
Jessica
September 25, 2022 5:23 pm

5 stars
Delicious and kid approved. Can these be frozen?

Becky
Becky
September 6, 2022 3:04 pm

5 stars
Love these muffins! I used Gluten-free flour & pumpkin in mine!! Very yummy!! Thank you for a recipe that is healthy!

Emily Richter
September 9, 2022 2:26 pm
Reply to  Becky

So glad these modifications worked for you!

Sofia Graf
August 13, 2022 8:05 am

5 stars
I love baking muffins and that is why the recipe for healthy chocolate muffins attracted me first. However, I have tried the muffin recipe with organic ghee instead of oil. And believe me, the result was awesome. I like the ghee bakes muffins. You may try also the muffin recipe with ghee too.

Emily Richter
August 22, 2022 3:19 pm
Reply to  Sofia Graf

Thanks for sharing this, Sofia!

Claire
Claire
March 26, 2022 9:18 pm
Recipe Rating :
     

5 stars
I made these tonight and they are so good and moist! I used 1% milk only bc I was out of almond and I used brown sugar instead of coconut. I also added 1/2 cup of shredded coconut and it was so good and added some texture. Iโ€™m sure the recipe is amazing without any changes as well. Itโ€™s fool proof and impossible to mess up! They are best fresh out of the oven still warm! Great recipe ๐Ÿ™‚

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Lisa McDowell
Lisa McDowell
March 18, 2022 5:30 pm
Recipe Rating :
     

5 stars
These are so tasty! I even used chia seed substitute for the eggs bc we have egg allergies. And it still turned out wonderful and so moist!! My kids loved them!! Will definitely be making again!